Showing : rna seq • reset
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How to create manhattan plot with DESeq2
deseq2 mahattan plot RNA Seq
updated 4.1 years ago by ▴ 150 • written 5.1 years ago by • 0
2
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5
replies
3.8k
views
Possible batch effect correction with RNA-Seq data when the batches do not contain both biological conditions for DE analysis
batch effect limma rna seq DE
updated 4.6 years ago by ★ 13k • written 4.6 years ago by ▴ 830
0
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3
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906
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Normalization of RNA seq data
RNA seq cpm
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
4
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4
replies
1.1k
views
Custom gene annotations for SGSeq
sgseq alternative splicing rna seq
updated 3 months ago by • 0 • written 5.0 years ago by • 0
1
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4
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1.1k
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Difference between Fold Changes from EdgeR glmLRTest and directly calculated fold changes.
edger RNA Seq
updated 5.0 years ago by 67k • written 5.0 years ago by ▴ 30
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0
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644
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searching for specific RNA sequences
rna seq
5.0 years ago adeler001 • 0
0
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2
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965
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using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq SGSeq Alternative splicing
updated 5.1 years ago by ▴ 260 • written 5.1 years ago by • 0
0
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1
reply
667
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51 views DESeq2 RNAseq differential expression analysis
deseq2 likelihood ratio rna seq wald test
updated 5.2 years ago by 43k • written 5.2 years ago by • 0
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2
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1.1k
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Need help cprrecting overlappinge genes on valcano plot
volcano plot rna seq
updated 5.2 years ago by 43k • written 5.2 years ago by • 0
1
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5
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1.5k
views
Time course experiment using limma with voom
limma voom RNA Seq Time-course experiments
updated 5.4 years ago by ★ 28k • written 5.4 years ago by • 0
5
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3
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1.2k
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Steep dendrograms and few modules. WGCNA on RNA seq data
RNA seq wgcna
updated 5.5 years ago by ★ 3.0k • written 5.5 years ago by ▴ 20
1
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2
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2.2k
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adapter trimming paired vs unpaired reads
rna seq trimmomatic trimming adapter trimming paired analysis
5.6 years ago Mozart ▴ 30
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1.8k
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Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2 hierarchical clustering microarray RNA seq DEG
6.8 years ago lawarde.ankita1 ▴ 30
13 results • Page 1 of 1
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Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
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Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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